7BRT
Crystal structure of Sec62 LIR fused to GABARAP
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | PHOTON FACTORY BEAMLINE AR-NE3A |
Synchrotron site | Photon Factory |
Beamline | AR-NE3A |
Temperature [K] | 95 |
Detector technology | PIXEL |
Collection date | 2017-11-13 |
Detector | DECTRIS PILATUS 2M-F |
Wavelength(s) | 1.0 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 42.887, 42.889, 144.012 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 41.105 - 1.999 |
R-factor | 0.1663 |
Rwork | 0.166 |
R-free | 0.18360 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 1gnu |
RMSD bond length | 0.007 |
RMSD bond angle | 0.906 |
Data reduction software | XDS |
Data scaling software | XDS |
Phasing software | PHENIX (dev_2450) |
Refinement software | PHENIX (dev_2450) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 41.105 | 2.071 |
High resolution limit [Å] | 1.999 | 1.999 |
Rmerge | 0.164 | 0.920 |
Rmeas | 0.178 | 0.178 |
Rpim | 0.069 | 0.069 |
Number of reflections | 18735 | 1782 |
<I/σ(I)> | 9.27 | 2.02 |
Completeness [%] | 99.7 | 98.34 |
Redundancy | 6.5 | 5.8 |
CC(1/2) | 0.996 | 0.759 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 8.5 | 293 | 1.5 M ammonium sulfate, 0.1 M Tris pH 8.5 |