7BNY
Structure of 2A protein from encephalomyocarditis virus (EMCV)
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | DIAMOND BEAMLINE I03 |
Synchrotron site | Diamond |
Beamline | I03 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2018-06-24 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 0.97958 |
Spacegroup name | P 62 2 2 |
Unit cell lengths | 91.560, 91.560, 316.390 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 43.910 - 2.620 |
R-factor | 0.2267 |
Rwork | 0.225 |
R-free | 0.25110 |
Structure solution method | MAD |
RMSD bond length | 0.003 |
RMSD bond angle | 0.741 |
Data reduction software | xia2 |
Data scaling software | Aimless |
Phasing software | SHARP |
Refinement software | PHENIX (1.18.1_3865) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 43.910 | 2.670 |
High resolution limit [Å] | 2.620 | 2.620 |
Rmerge | 0.227 | 2.766 |
Rpim | 0.053 | 0.640 |
Number of reflections | 24668 | 1179 |
<I/σ(I)> | 11.5 | 1 |
Completeness [%] | 100.0 | 99.8 |
Redundancy | 18.9 | 19.4 |
CC(1/2) | 0.998 | 0.728 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 5.7 | 294 | Purified EMCV 2A was concentrated to 5.9 mg/ml in 10 mM HEPES pH 7.9, 1.0 M NaCl, 2.0 mM DTT Drops were prepared by mixing 200 nL protein and 200 nL crystallization buffer: 0.625 M ammonium sulfate, 0.15 M tri-sodium citrate pH 5.7 |
1 | VAPOR DIFFUSION, SITTING DROP | 5.7 | 294 | Purified EMCV 2A was concentrated to 5.9 mg/ml in 10 mM HEPES pH 7.9, 1.0 M NaCl, 2.0 mM DTT Drops were prepared by mixing 200 nL protein and 200 nL crystallization buffer: 0.625 M ammonium sulfate, 0.15 M tri-sodium citrate pH 5.7 |