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7BNY

Structure of 2A protein from encephalomyocarditis virus (EMCV)

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsDIAMOND BEAMLINE I03
Synchrotron siteDiamond
BeamlineI03
Temperature [K]100
Detector technologyPIXEL
Collection date2018-06-24
DetectorDECTRIS PILATUS 6M
Wavelength(s)0.97958
Spacegroup nameP 62 2 2
Unit cell lengths91.560, 91.560, 316.390
Unit cell angles90.00, 90.00, 120.00
Refinement procedure
Resolution43.910 - 2.620
R-factor0.2267
Rwork0.225
R-free0.25110
Structure solution methodMAD
RMSD bond length0.003
RMSD bond angle0.741
Data reduction softwarexia2
Data scaling softwareAimless
Phasing softwareSHARP
Refinement softwarePHENIX (1.18.1_3865)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]43.9102.670
High resolution limit [Å]2.6202.620
Rmerge0.2272.766
Rpim0.0530.640
Number of reflections246681179
<I/σ(I)>11.51
Completeness [%]100.099.8
Redundancy18.919.4
CC(1/2)0.9980.728
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP5.7294Purified EMCV 2A was concentrated to 5.9 mg/ml in 10 mM HEPES pH 7.9, 1.0 M NaCl, 2.0 mM DTT Drops were prepared by mixing 200 nL protein and 200 nL crystallization buffer: 0.625 M ammonium sulfate, 0.15 M tri-sodium citrate pH 5.7
1VAPOR DIFFUSION, SITTING DROP5.7294Purified EMCV 2A was concentrated to 5.9 mg/ml in 10 mM HEPES pH 7.9, 1.0 M NaCl, 2.0 mM DTT Drops were prepared by mixing 200 nL protein and 200 nL crystallization buffer: 0.625 M ammonium sulfate, 0.15 M tri-sodium citrate pH 5.7

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PDB entries from 2024-07-24

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