7B7H
The glucuronoyl esterase OtCE15A R268A variant from Opitutus terrae in complex with, and covalently linked to, D-glucuronate
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | MAX IV BEAMLINE BioMAX |
Synchrotron site | MAX IV |
Beamline | BioMAX |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2020-02-23 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 1.008 |
Spacegroup name | P 1 |
Unit cell lengths | 47.333, 47.298, 51.112 |
Unit cell angles | 61.95, 67.92, 88.27 |
Refinement procedure
Resolution | 43.150 - 1.800 |
R-factor | 0.1851 |
Rwork | 0.183 |
R-free | 0.22240 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 6gs0 |
RMSD bond length | 0.007 |
RMSD bond angle | 0.897 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | PHASER |
Refinement software | PHENIX (1.19.2_4158) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 43.150 | 1.861 |
High resolution limit [Å] | 1.796 | 1.796 |
Rmerge | 0.120 | 1.256 |
Number of reflections | 32171 | 3093 |
<I/σ(I)> | 6.84 | 0.95 |
Completeness [%] | 96.6 | 92.99 |
Redundancy | 3.6 | 3.6 |
CC(1/2) | 0.995 | 0.461 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 6.5 | 298 | Morpheus screen consisting of 0.1 M buffer system 1 (imidazole and MES), 30% precipitant mix 2 (ethylene glycol and PEG 8000) and amino acid additives (L-Glutamate, Alanine (racemic); Glycine; Lysine HCl (racemic); Serine (racemic)). Soaking was carried out in a saturated solution of Bnz-GlcA in 10% DMSO and 90% mother liquor for 30 seconds before being flash frozen. |