7B4T
Broadly neutralizing DARPin bnD.1 in complex with the HIV-1 envelope variable loop 3 crown mimetic peptide V3-IF (BG505)
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SLS BEAMLINE X06DA |
Synchrotron site | SLS |
Beamline | X06DA |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2016-02-08 |
Detector | DECTRIS PILATUS 2M |
Wavelength(s) | 1.00004 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 33.980, 67.050, 95.610 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 38.925 - 1.950 |
R-factor | 0.2115 |
Rwork | 0.209 |
R-free | 0.25200 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | in-house model |
RMSD bond length | 0.004 |
RMSD bond angle | 0.636 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | PHASER |
Refinement software | PHENIX (1.10_2155) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 38.925 | 38.925 | 2.000 |
High resolution limit [Å] | 1.950 | 8.720 | 1.950 |
Rmerge | 0.151 | 0.030 | 1.498 |
Rmeas | 0.170 | 0.033 | 1.712 |
Total number of observations | 136355 | ||
Number of reflections | 30369 | 333 | 2265 |
<I/σ(I)> | 8.27 | 39.98 | 1.07 |
Completeness [%] | 98.7 | 98.5 | 98.3 |
Redundancy | 4.49 | 4.862 | 4.27 |
CC(1/2) | 0.995 | 0.999 | 0.552 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION | 277.15 | 0.2 M Ammonium sulphate, 12% w/v PEG 4000 |