7B2X
Crystal structure of human 5' exonuclease Appollo H61Y variant
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | DIAMOND BEAMLINE I02 |
Synchrotron site | Diamond |
Beamline | I02 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2016-04-15 |
Detector | DECTRIS PILATUS3 6M |
Wavelength(s) | 0.9795 |
Spacegroup name | P 41 21 2 |
Unit cell lengths | 90.738, 90.738, 104.122 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 45.370 - 3.100 |
R-factor | 0.2704 |
Rwork | 0.268 |
R-free | 0.31900 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5aho |
RMSD bond length | 0.003 |
RMSD bond angle | 0.535 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | PHASER |
Refinement software | PHENIX (1.18.2_3874) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 45.400 | 3.310 |
High resolution limit [Å] | 3.100 | 3.100 |
Rmerge | 0.150 | 2.170 |
Number of reflections | 8386 | 1474 |
<I/σ(I)> | 13.8 | 1.3 |
Completeness [%] | 100.0 | 100 |
Redundancy | 12.7 | |
CC(1/2) | 0.990 | 0.580 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 277 | 22% PEG3350 -- 0.1M HEPES pH 7.0 -- 0.2M sodium formate |