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7AUS

Yeast Diphosphoinositol Polyphosphate Phosphohydrolase DDP1 in complex with P15

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsALBA BEAMLINE XALOC
Synchrotron siteALBA
BeamlineXALOC
Temperature [K]100
Detector technologyPIXEL
Collection date2019-07-03
DetectorDECTRIS PILATUS 6M
Wavelength(s)0.979182
Spacegroup nameP 32 2 1
Unit cell lengths61.670, 61.670, 95.730
Unit cell angles90.00, 90.00, 120.00
Refinement procedure
Resolution46.680 - 1.750
R-factor0.243
Rwork0.241
R-free0.27920
Structure solution methodFOURIER SYNTHESIS
Starting model (for MR)7aui
RMSD bond length0.005
RMSD bond angle1.420
Data reduction softwareXDS
Data scaling softwareXDS
Phasing softwareREFMAC
Refinement softwareREFMAC (5.8.0267)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]47.8701.780
High resolution limit [Å]1.7501.750
Rmerge0.0470.652
Rpim0.0110.149
Number of reflections218641171
<I/σ(I)>34.35
Completeness [%]100.0100
Redundancy18.919.8
CC(1/2)0.9980.948
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP4.529116% PEG 3350, 0.1 M Sodium acetate pH 4.5, 0.1 M NaCl, 5 mM Magnesium chloride, 20 mM Sodium fluoride. Protein buffer: 20 mM Tris pH 8.0, 150 mM NaCl, 1 mM DTT, 10 mM Sodium hexametaphosphate.

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PDB entries from 2024-05-15

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