Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

7APR

Bacillithiol Disulfide Reductase Bdr (YpdA) from Staphylococcus aureus

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsMAX IV BEAMLINE BioMAX
Synchrotron siteMAX IV
BeamlineBioMAX
Temperature [K]100
Detector technologyPIXEL
Collection date2019-05-23
DetectorDECTRIS EIGER X 16M
Wavelength(s)0.946444
Spacegroup nameP 61 2 2
Unit cell lengths180.308, 180.308, 350.459
Unit cell angles90.00, 90.00, 120.00
Refinement procedure
Resolution29.940 - 3.100
R-factor0.2464
Rwork0.244
R-free0.29080
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)7a76
RMSD bond length0.003
RMSD bond angle0.650
Data reduction softwareXDS
Data scaling softwareAimless
Phasing softwarePHASER
Refinement softwarePHENIX (1.18.2_3874)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]29.9403.180
High resolution limit [Å]3.1003.100
Rmerge0.1250.505
Rmeas0.1190.480
Number of reflections616384471
<I/σ(I)>14.34.5
Completeness [%]99.999.9
Redundancy9.810.3
CC(1/2)0.9980.938
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP8.52980.03 M magnesium chloride, 0.03 M calcium chloride, 0.1 M bicine/Trizma, pH = 8.5, 10% w/v PEG 4000, 20% v/v glycerol

224201

PDB entries from 2024-08-28

PDB statisticsPDBj update infoContact PDBjnumon