7AP7
Structure of the W64R amyloidogenic variant of human lysozyme
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SOLEIL BEAMLINE PROXIMA 2 |
Synchrotron site | SOLEIL |
Beamline | PROXIMA 2 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2016-06-10 |
Detector | DECTRIS EIGER X 9M |
Wavelength(s) | 0.980119943619 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 31.773, 56.655, 60.597 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 30.298 - 1.150 |
R-factor | 0.1623 |
Rwork | 0.161 |
R-free | 0.19270 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 1jsf |
RMSD bond length | 0.022 |
RMSD bond angle | 1.982 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | PHASER (2.4.0) |
Refinement software | PHENIX (1.10) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 41.384 | 41.384 | 1.220 |
High resolution limit [Å] | 1.150 | 3.430 | 1.150 |
Rmerge | 0.084 | 0.053 | 0.769 |
Number of reflections | 39372 | 1640 | 6079 |
<I/σ(I)> | 10.04 | 30.07 | 1.75 |
Completeness [%] | 98.7 | 99.8 | 95.1 |
Redundancy | 6.35 | ||
CC(1/2) | 0.998 | 0.996 | 0.798 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 6.5 | 293 | 1.25M (NH4)2SO4, 0.1M cacodylate pH 6.5, 10 mM Tris pH 7, 14.4 TP buffer |