7AM9
OMPD-domain of human UMPS in complex with the substrate OMP at 0.99 Angstroms resolution
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | PETRA III, EMBL c/o DESY BEAMLINE P14 (MX2) |
Synchrotron site | PETRA III, EMBL c/o DESY |
Beamline | P14 (MX2) |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2018-07-08 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 0.82660 |
Spacegroup name | C 2 2 21 |
Unit cell lengths | 77.290, 116.820, 61.950 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 44.710 - 0.990 |
R-factor | 0.1154 |
Rwork | 0.114 |
R-free | 0.13900 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 2cqd |
RMSD bond length | 0.022 |
RMSD bond angle | 2.298 |
Data reduction software | XDS |
Data scaling software | STARANISO |
Phasing software | REFMAC |
Refinement software | REFMAC (5.8.0258) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 44.710 | 1.101 |
High resolution limit [Å] | 0.990 | 0.993 |
Number of reflections | 96533 | 4829 |
<I/σ(I)> | 21.8 | 1.9 |
Completeness [%] | 94.7 | |
Redundancy | 37 | |
CC(1/2) | 1.000 | 0.664 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 8 | 293 | Crystallization: 100 mM Tris/HCl pH 8.0, 1.9 - 2.1 M Ammonium sulfate, 10 mM Glutathion, 5% (v/v) Glycerol Soaking: 100 mM Tris/HCl pH 8.0, 2.0 M Ammonium sulfate, 10 mM Glutathion, 5% (v/v) Glycerol, 50 mM OMP |