7A9A
Crystal structure of rubredoxin B (Rv3250c) from Mycobacterium tuberculosis
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ESRF BEAMLINE ID30B |
Synchrotron site | ESRF |
Beamline | ID30B |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2018-07-08 |
Detector | DECTRIS PILATUS3 6M |
Wavelength(s) | 0.97625 |
Spacegroup name | P 1 |
Unit cell lengths | 21.035, 61.322, 76.910 |
Unit cell angles | 90.15, 90.32, 93.75 |
Refinement procedure
Resolution | 47.950 - 1.170 |
R-factor | 0.1554 |
Rwork | 0.154 |
R-free | 0.18680 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 2pya |
RMSD bond length | 0.004 |
RMSD bond angle | 0.657 |
Data reduction software | XDS |
Data scaling software | STARANISO |
Phasing software | MoRDa |
Refinement software | PHENIX (1.17.1_3660) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 47.950 | 1.310 |
High resolution limit [Å] | 1.170 | 1.170 |
Rmerge | 0.135 | 2.077 |
Rmeas | 0.160 | 2.466 |
Rpim | 0.086 | 1.312 |
Number of reflections | 119411 | 119411 |
<I/σ(I)> | 4.69 | 0.55 |
Completeness [%] | 93.2 | 90.95 |
Redundancy | 3.5 | 3.5 |
CC(1/2) | 0.994 | 0.295 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 7.5 | 293 | 100 mM Tris-HCl, 50 mM zinc acetate, 25 % PEG 3350 |