7A3D
Intertwined dimer of the c-Src SH3 domain mutant T125S
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ALBA BEAMLINE XALOC |
Synchrotron site | ALBA |
Beamline | XALOC |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2018-12-05 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 0.9793 |
Spacegroup name | P 65 |
Unit cell lengths | 47.232, 47.232, 126.413 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 19.460 - 2.200 |
R-factor | 0.2104 |
Rwork | 0.210 |
R-free | 0.22080 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4jz3 |
Data reduction software | XDS |
Data scaling software | Aimless (0.7.4) |
Phasing software | PHASER |
Refinement software | PHENIX (dev-3951) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 19.460 | 19.460 | 2.270 |
High resolution limit [Å] | 2.200 | 8.800 | 2.200 |
Rmerge | 0.075 | 0.062 | 0.748 |
Rmeas | 0.089 | 0.075 | 0.908 |
Rpim | 0.047 | 0.040 | 0.505 |
Total number of observations | 376 | 1586 | |
Number of reflections | 7852 | 122 | 544 |
<I/σ(I)> | 8.3 | 20.4 | 1.2 |
Completeness [%] | 96.3 | 88.4 | 70.5 |
Redundancy | 3.3 | 3.1 | 2.9 |
CC(1/2) | 0.987 | 0.995 | 0.622 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 5 | 298 | 5% PEG 300, 2 M ammomium sulfate, 0.1M sodium acetate |