7A2X
Crystal structure of the Fyn SH3 domain L112V-S114N-S115T-E121L-R123H mutant in complex with VSL12 at pH 5.0
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ALBA BEAMLINE XALOC |
Synchrotron site | ALBA |
Beamline | XALOC |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2017-09-30 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 0.9792 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 32.897, 33.100, 62.624 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 17.660 - 0.920 |
R-factor | 0.1307 |
Rwork | 0.130 |
R-free | 0.14830 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 3ua6 |
Data reduction software | XDS |
Data scaling software | Aimless (0.5.31) |
Phasing software | PHASER |
Refinement software | PHENIX (1.18.2-3874) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 17.660 | 17.660 | 0.970 |
High resolution limit [Å] | 0.920 | 2.920 | 0.920 |
Rmerge | 0.067 | 0.066 | 0.527 |
Rmeas | 0.069 | 0.068 | 0.553 |
Rpim | 0.014 | 0.015 | 0.160 |
Total number of observations | 1048999 | 37216 | 59469 |
Number of reflections | 46882 | 1677 | 6128 |
<I/σ(I)> | 33 | 108.9 | 5.4 |
Completeness [%] | 98.2 | 99.7 | 89.9 |
Redundancy | 22.4 | 22.2 | 9.7 |
CC(1/2) | 1.000 | 0.999 | 0.908 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 5 | 298 | 0.5 M ammonium sulfate, 0.1 sodium acetate |