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7ZD2

Crystal structure of Pseudomonas aeruginosa S-adenosyl-L-homocysteine hydrolase inhibited by Co2+ ions.

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeROTATING ANODE
Source detailsRIGAKU PhotonJet-R
Temperature [K]100
Detector technologyPIXEL
Collection date2021-02-01
DetectorRIGAKU HyPix-6000HE
Wavelength(s)1.5418
Spacegroup nameC 1 2 1
Unit cell lengths177.150, 134.210, 109.610
Unit cell angles90.00, 106.08, 90.00
Refinement procedure
Resolution29.320 - 2.160
R-factor0.1803
Rwork0.180
R-free0.22650
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)6f3m
Data reduction softwareXDS
Data scaling softwareXSCALE
Phasing softwareREFMAC
Refinement softwarePHENIX (1.19.2.4158)
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]29.32029.3202.210
High resolution limit [Å]2.1609.6402.160
Rmerge0.1340.0370.801
Rmeas0.1620.0460.965
Total number of observations406543
Number of reflections13066112829410
<I/σ(I)>6.5920.661.41
Completeness [%]98.582.596.6
Redundancy3.1112.4783.116
CC(1/2)0.9930.9960.604
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP8.52910.02 M 1,6-hexanediol, 0.02 M 1-butanol, 0.02 M (RS)-1,2-propanediol, 0.02 M 2-propanol, 0.02 M 1,4-butanediol, 0.02 M 1,3-propanediol, 10% w/v PEG 20 000, 20% v/v PEG MME 550, 0.1 M bicine/Trizma base pH 8.5

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PDB entries from 2024-05-15

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