7ZBV
Crystal structure of the peptidase domain of collagenase G from Clostridium histolyticum in complex with a diphosphonate-based inhibitor
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ESRF BEAMLINE ID30B |
Synchrotron site | ESRF |
Beamline | ID30B |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2021-06-10 |
Detector | DECTRIS PILATUS3 6M |
Wavelength(s) | 0.9763 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 60.267, 77.787, 97.319 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 60.760 - 1.950 |
Rwork | 0.186 |
R-free | 0.22860 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 2y6i |
RMSD bond length | 0.012 |
RMSD bond angle | 1.169 |
Data reduction software | XDS |
Data scaling software | Aimless |
Phasing software | PHASER |
Refinement software | PHENIX (1.20_4459) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 60.760 | 2.020 |
High resolution limit [Å] | 1.950 | 1.950 |
Rmerge | 0.037 | 0.396 |
Number of reflections | 33936 | 3303 |
<I/σ(I)> | 12.33 | |
Completeness [%] | 99.7 | 99.7 |
Redundancy | 2 | |
CC(1/2) | 0.998 | 0.699 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 293 | Tris-Bicine pH 8.5,pentaethylene glycol, diethylene glycol, triethylene glycol, tetraethylene glycol, PEG 20,000 and PEG 550 MME |