7YYK
Crystal structure of the O-fucosylated form of TSRs1-3 from the human thrombospondin 1
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | DIAMOND BEAMLINE I03 |
Synchrotron site | Diamond |
Beamline | I03 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2014-05-22 |
Detector | DECTRIS PILATUS3 S 6M |
Wavelength(s) | 0.9762 |
Spacegroup name | C 2 2 21 |
Unit cell lengths | 66.153, 85.197, 62.121 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 20.000 - 2.600 |
R-factor | 0.25103 |
Rwork | 0.249 |
R-free | 0.31663 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 1lsl |
RMSD bond length | 0.013 |
RMSD bond angle | 1.738 |
Data reduction software | XDS |
Data scaling software | SCALA |
Phasing software | PHASER |
Refinement software | REFMAC (5.8.0267) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 20.000 | 2.740 |
High resolution limit [Å] | 2.600 | 2.600 |
Rmerge | 0.197 | 0.859 |
Number of reflections | 5645 | 813 |
<I/σ(I)> | 6.2 | 1.7 |
Completeness [%] | 99.8 | |
Redundancy | 8.3 | |
CC(1/2) | 0.987 | 0.871 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 291 | PEG 8000, zinc acetate, buffer MES |