7YPL
Crystal structure of fibronectin type III domain variant, a VEGFR2-specific antagonist
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | NSRRC BEAMLINE BL13B1 |
Synchrotron site | NSRRC |
Beamline | BL13B1 |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2016-10-25 |
Detector | RAYONIX MX300-HS |
Wavelength(s) | 1.0000 |
Spacegroup name | P 65 2 2 |
Unit cell lengths | 68.791, 68.791, 68.799 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 29.792 - 1.630 |
Rwork | 0.177 |
R-free | 0.21330 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4lxo |
RMSD bond length | 0.010 |
RMSD bond angle | 1.500 |
Data reduction software | HKL-2000 (2.3.10) |
Data scaling software | HKL-2000 (2.3.10) |
Phasing software | HKL-3000 (2.3.10) |
Refinement software | REFMAC (5.8.0267) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 30.000 | 1.690 |
High resolution limit [Å] | 1.630 | 1.630 |
Number of reflections | 12563 | 1222 |
<I/σ(I)> | 32.7 | |
Completeness [%] | 100.0 | |
Redundancy | 10 | |
CC(1/2) | 0.895 | 0.973 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 293 | 0.2M Li2SO4 0.1M CHES pH 9.5 0.7M K/Na tartrate |