Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

7YPL

Crystal structure of fibronectin type III domain variant, a VEGFR2-specific antagonist

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsNSRRC BEAMLINE BL13B1
Synchrotron siteNSRRC
BeamlineBL13B1
Temperature [K]100
Detector technologyCCD
Collection date2016-10-25
DetectorRAYONIX MX300-HS
Wavelength(s)1.0000
Spacegroup nameP 65 2 2
Unit cell lengths68.791, 68.791, 68.799
Unit cell angles90.00, 90.00, 120.00
Refinement procedure
Resolution29.792 - 1.630
Rwork0.177
R-free0.21330
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)4lxo
RMSD bond length0.010
RMSD bond angle1.500
Data reduction softwareHKL-2000 (2.3.10)
Data scaling softwareHKL-2000 (2.3.10)
Phasing softwareHKL-3000 (2.3.10)
Refinement softwareREFMAC (5.8.0267)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]30.0001.690
High resolution limit [Å]1.6301.630
Number of reflections125631222
<I/σ(I)>32.7
Completeness [%]100.0
Redundancy10
CC(1/2)0.8950.973
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP2930.2M Li2SO4 0.1M CHES pH 9.5 0.7M K/Na tartrate

219869

PDB entries from 2024-05-15

PDB statisticsPDBj update infoContact PDBjnumon