7YNU
Crystal structure of Hen Egg white LYSOZYME introduced with O-(2-nitrobenzyl)-L-tyrosine
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SPRING-8 BEAMLINE BL32XU |
Synchrotron site | SPring-8 |
Beamline | BL32XU |
Temperature [K] | 93 |
Detector technology | PIXEL |
Collection date | 2020-12-11 |
Detector | DECTRIS EIGER X 9M |
Wavelength(s) | 1 |
Spacegroup name | P 43 21 2 |
Unit cell lengths | 79.680, 79.680, 37.050 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 39.840 - 1.440 |
R-factor | 0.1934 |
Rwork | 0.191 |
R-free | 0.22260 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4ym8 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | PHASER |
Refinement software | PHENIX (1.19.2_4158) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 39.840 | 39.840 | 1.530 |
High resolution limit [Å] | 1.440 | 4.320 | 1.440 |
Rmerge | 0.223 | 0.142 | 0.872 |
Rmeas | 0.232 | 0.148 | 0.901 |
Total number of observations | 350557 | ||
Number of reflections | 22119 | 945 | 3595 |
<I/σ(I)> | 5.62 | 12.96 | 1.06 |
Completeness [%] | 99.6 | 99.4 | 99.9 |
Redundancy | 15.849 | 15.402 | 15.564 |
CC(1/2) | 0.965 | 0.980 | 0.741 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 3.6 | 293 | 28% NaCl, 8% PEG6000, 100 mM Na-acetate (pH3.6) |