7YF5
Crystal Structure of the UDPGA Binding Domain of the Human Phase II Metabolizing Enzyme UDP-Glucuronosyltransferase 2B10
Experimental procedure
| Experimental method | SINGLE WAVELENGTH |
| Source type | SYNCHROTRON |
| Source details | SSRF BEAMLINE BL17B1 |
| Synchrotron site | SSRF |
| Beamline | BL17B1 |
| Temperature [K] | 100 |
| Detector technology | CCD |
| Collection date | 2022-01-14 |
| Detector | RAYONIX MX-300 |
| Wavelength(s) | 0.97918 |
| Spacegroup name | C 1 2 1 |
| Unit cell lengths | 85.907, 58.387, 68.867 |
| Unit cell angles | 90.00, 98.14, 90.00 |
Refinement procedure
| Resolution | 34.087 - 1.527 |
| R-factor | 0.217 |
| Rwork | 0.215 |
| R-free | 0.24460 |
| Structure solution method | MOLECULAR REPLACEMENT |
| Starting model (for MR) | 2o6l |
| RMSD bond length | 0.009 |
| RMSD bond angle | 0.864 |
| Data reduction software | autoPROC |
| Data scaling software | Aimless (0.7.4) |
| Phasing software | PHENIX |
| Refinement software | PHENIX (1.10.1_2155) |
Data quality characteristics
| Overall | Inner shell | Outer shell | |
| Low resolution limit [Å] | 48.130 | 48.130 | 1.610 |
| High resolution limit [Å] | 1.527 | 4.830 | 1.530 |
| Rmerge | 0.105 | 0.136 | 0.664 |
| Rmeas | 0.115 | 0.148 | 0.775 |
| Rpim | 0.046 | 0.058 | 0.389 |
| Total number of observations | 9564 | 23293 | |
| Number of reflections | 48413 | 1667 | 6675 |
| <I/σ(I)> | 14.2 | 23 | 3.4 |
| Completeness [%] | 94.8 | 99 | 90.4 |
| Redundancy | 4.9 | 5.7 | 3.5 |
| CC(1/2) | 0.994 | 0.986 | 0.695 |
Crystallization Conditions
| crystal ID | method | pH | temperature | details |
| 1 | EVAPORATION | 5 | 292 | 0.1 M sodium citrate pH 5.0, 2.5 M AMS, 10% glycerol |
