7YDG
Crystal structure of human SARS2 catalytic domain with a disease related mutation
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRF BEAMLINE BL19U1 |
Synchrotron site | SSRF |
Beamline | BL19U1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2021-05-22 |
Detector | DECTRIS PILATUS3 6M |
Wavelength(s) | 0.97915 |
Spacegroup name | P 43 21 2 |
Unit cell lengths | 144.180, 144.180, 245.470 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 25.450 - 3.200 |
R-factor | 0.2042 |
Rwork | 0.203 |
R-free | 0.22820 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 1wle |
Data reduction software | XDS |
Data scaling software | Aimless (0.7.7) |
Phasing software | MOLREP |
Refinement software | PHENIX (1.13) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 49.180 | 49.180 | 3.320 |
High resolution limit [Å] | 3.200 | 11.970 | 3.200 |
Rmerge | 0.273 | 0.077 | 4.362 |
Rmeas | 0.280 | 0.080 | 4.468 |
Rpim | 0.062 | 0.021 | 0.964 |
Total number of observations | 853392 | 15260 | 92999 |
Number of reflections | 42890 | 946 | 4415 |
<I/σ(I)> | 9.5 | 29.1 | 1 |
Completeness [%] | 100.0 | 98.6 | 100 |
Redundancy | 19.9 | 16.1 | 21.1 |
CC(1/2) | 0.997 | 0.996 | 0.490 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 289 | Na citrate, PEG4000 |