7XX3
Crystal structure of human Superoxide Dismutase (SOD1) in complex with a fungal metabolite molecule, Phialomustin B (PB)
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ESRF BEAMLINE ID30B |
Synchrotron site | ESRF |
Beamline | ID30B |
Temperature [K] | 81 |
Detector technology | PIXEL |
Collection date | 2016-06-16 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 0.987 |
Spacegroup name | P 63 2 2 |
Unit cell lengths | 242.445, 242.445, 144.491 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 38.690 - 1.900 |
R-factor | 0.2001 |
Rwork | 0.199 |
R-free | 0.23040 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5yto |
Data reduction software | HKL-3000 |
Data scaling software | HKL-2000 |
Phasing software | PHENIX |
Refinement software | PHENIX (1.20.1_4487) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 50.000 | 1.930 |
High resolution limit [Å] | 1.900 | 5.160 | 1.900 |
Rmerge | 0.112 | 0.041 | 1.640 |
Rmeas | 0.117 | 0.043 | 1.747 |
Rpim | 0.036 | 0.012 | 0.592 |
Total number of observations | 1880644 | ||
Number of reflections | 195483 | 10366 | 9652 |
<I/σ(I)> | 7 | ||
Completeness [%] | 100.0 | 99.7 | 100 |
Redundancy | 9.6 | 13 | 8.2 |
CC(1/2) | 0.999 | 0.719 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 6.5 | 293 | 1.3 M Sodium citrate (pH = 6.5) |