7XQV
The complex of nanobody Rh57 binding to GTP-bound RhoA active form
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRF BEAMLINE BL02U1 |
Synchrotron site | SSRF |
Beamline | BL02U1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2021-10-06 |
Detector | DECTRIS EIGER2 X 4M |
Wavelength(s) | 0.979 |
Spacegroup name | I 41 2 2 |
Unit cell lengths | 142.030, 142.030, 69.260 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 62.250 - 2.760 |
R-factor | 0.2228 |
Rwork | 0.220 |
R-free | 0.26970 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 1kmq |
Data reduction software | DIALS |
Data scaling software | DIALS |
Phasing software | PHENIX |
Refinement software | PHENIX (1.20.1-4487) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 71.010 | 71.010 | 2.830 |
High resolution limit [Å] | 2.760 | 12.340 | 2.760 |
Rmerge | 0.381 | 0.072 | 3.889 |
Rmeas | 0.389 | 0.074 | 3.965 |
Rpim | 0.077 | 0.017 | 0.764 |
Total number of observations | 237878 | 2408 | 18200 |
Number of reflections | 9414 | 135 | 688 |
<I/σ(I)> | 14.9 | 40.5 | 1.2 |
Completeness [%] | 99.9 | 99.6 | 100 |
Redundancy | 25.3 | 17.8 | 26.5 |
CC(1/2) | 0.998 | 0.999 | 0.443 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 291 | 20% (w/v) PEG 8000; 100 mM Tris base/ Hydrochloric acid, pH 8.5; 200 mM MgCl2 |