7XB5
Structure of the ligand-binding domain of S. cerevisiae Upc2 in fusion with T4 lysozyme
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | PAL/PLS BEAMLINE 7A (6B, 6C1) |
Synchrotron site | PAL/PLS |
Beamline | 7A (6B, 6C1) |
Temperature [K] | 110 |
Detector technology | CCD |
Collection date | 2015-08-04 |
Detector | ADSC QUANTUM 270 |
Wavelength(s) | 0.97934 |
Spacegroup name | C 2 2 21 |
Unit cell lengths | 65.744, 125.085, 155.272 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 32.980 - 3.440 |
R-factor | 0.2601 |
Rwork | 0.258 |
R-free | 0.30080 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4n9n |
RMSD bond length | 0.012 |
RMSD bond angle | 1.724 |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | PHASER |
Refinement software | PHENIX (1.18.2_3874) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 50.000 | 3.560 |
High resolution limit [Å] | 3.440 | 3.500 |
Rmerge | 0.098 | 0.561 |
Number of reflections | 8514 | 418 |
<I/σ(I)> | 32.8 | 4.8 |
Completeness [%] | 97.9 | 96.5 |
Redundancy | 7.2 | 7.1 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 7 | 296 | 0.1 M HEPES pH 7.0, 12.5% PEG 8000, 0.2 M sodium citrate |