7X7O
SARS-CoV-2 spike RBD in complex with neutralizing antibody UT28K
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SPRING-8 BEAMLINE BL32XU |
Synchrotron site | SPring-8 |
Beamline | BL32XU |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2021-10-07 |
Detector | DECTRIS EIGER X 9M |
Wavelength(s) | 1.0000 |
Spacegroup name | I 1 2 1 |
Unit cell lengths | 138.249, 138.412, 221.107 |
Unit cell angles | 90.00, 90.05, 90.00 |
Refinement procedure
Resolution | 48.140 - 3.750 |
R-factor | 0.305 |
Rwork | 0.303 |
R-free | 0.33580 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 7jmp |
RMSD bond length | 0.005 |
RMSD bond angle | 0.836 |
Data reduction software | XDS (VERSION Feb 5, 202) |
Data scaling software | Aimless (0.7.7) |
Refinement software | REFMAC (5.8.0267) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 48.910 | 3.890 |
High resolution limit [Å] | 3.750 | 3.750 |
Number of reflections | 42875 | 16957 |
<I/σ(I)> | 7.1 | |
Completeness [%] | 99.9 | |
Redundancy | 3.6 | |
CC(1/2) | 0.921 | 0.469 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 293 | 0.1 M Citric acid pH5.0, 1.0 M Lithium chloride, 10% (w/v) PEG 6000 |