7WMC
Crystal structure of macrocyclic peptide 1 bound to human Nicotinamide N-methyltransferase
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | ROTATING ANODE |
Source details | RIGAKU MICROMAX-007 HF |
Temperature [K] | 100 |
Detector technology | IMAGE PLATE |
Collection date | 2017-11-06 |
Detector | RIGAKU RAXIS IV++ |
Wavelength(s) | 1.54178 |
Spacegroup name | P 32 2 1 |
Unit cell lengths | 70.021, 70.021, 227.598 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 75.870 - 2.550 |
R-factor | 0.1893 |
Rwork | 0.186 |
R-free | 0.25550 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.014 |
RMSD bond angle | 1.721 |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | MOLREP |
Refinement software | REFMAC (5.8.0218) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 75.870 | 50.000 | 2.640 |
High resolution limit [Å] | 2.550 | 5.490 | 2.550 |
Rmerge | 0.114 | 0.054 | 0.497 |
Rmeas | 0.120 | 0.056 | 0.521 |
Rpim | 0.035 | 0.016 | 0.155 |
Number of reflections | 22069 | 2404 | 2169 |
<I/σ(I)> | 8.9 | ||
Completeness [%] | 100.0 | 100 | 100 |
Redundancy | 11.2 | 12.4 | 10.8 |
CC(1/2) | 0.999 | 0.947 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 277 | 15%(w/v)PEG3350, 0.1 M sodium malonate pH7.5 |