Loading
PDBj
MenuPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help

7VTF

cytidine bound structure of Pseudouridine kinase (PUKI) from Escherichia coli strain B

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsPAL/PLS BEAMLINE 7A (6B, 6C1)
Synchrotron sitePAL/PLS
Beamline7A (6B, 6C1)
Temperature [K]100
Detector technologyCCD
Collection date2020-11-11
DetectorADSC QUANTUM 270
Wavelength(s)0.97932
Spacegroup nameP 3
Unit cell lengths185.999, 185.999, 50.960
Unit cell angles90.00, 90.00, 120.00
Refinement procedure
Resolution36.954 - 2.202
R-factor0.250260452486
Rwork0.249
R-free0.29794
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)3kzh
RMSD bond length0.004
RMSD bond angle1.013
Data reduction softwareHKL-2000
Data scaling softwareHKL-2000
Phasing softwarePHENIX
Refinement softwarePHENIX (1.9_1692)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]50.0002.280
High resolution limit [Å]2.2002.200
Number of reflections995989985
<I/σ(I)>13
Completeness [%]99.8
Redundancy5.3
CC(1/2)0.9880.486
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP2950.2M magnesium formate, 20% PEG 3350, 5% glycerol

231029

PDB entries from 2025-02-05

PDB statisticsPDBj update infoContact PDBjnumon