Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

7VSD

E. coli Ribonuclease HI in complex with one Mg2+ (2)

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsSPRING-8 BEAMLINE BL45XU
Synchrotron siteSPring-8
BeamlineBL45XU
Temperature [K]95
Detector technologyPIXEL
Collection date2021-04-07
DetectorDECTRIS PILATUS3 6M
Wavelength(s)1
Spacegroup nameP 43 21 2
Unit cell lengths85.363, 85.363, 77.798
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution47.690 - 1.700
R-factor0.1879
Rwork0.186
R-free0.23000
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)4z0u
RMSD bond length0.016
RMSD bond angle1.513
Data reduction softwareXDS
Data scaling softwareAimless
Phasing softwarePHASER
Refinement softwarePHENIX (1.18.2_3874)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]47.6901.730
High resolution limit [Å]1.7001.700
Rmerge0.1290.950
Rmeas0.1401.049
Rpim0.0560.442
Number of reflections322401677
<I/σ(I)>10.4
Completeness [%]99.9
Redundancy11.2
CC(1/2)0.9970.934
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP5.62930.2 M ammonium acetate, 0.1 M sodium citrate tribasic dihydrate pH 5.6, 30% w/v polyethylene glycol 4,000

219869

PDB entries from 2024-05-15

PDB statisticsPDBj update infoContact PDBjnumon