7VPB
Crystal structure of a novel hydrolase in apo form
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRF BEAMLINE BL19U1 |
Synchrotron site | SSRF |
Beamline | BL19U1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2021-07-04 |
Detector | DECTRIS PILATUS3 6M |
Wavelength(s) | 1.0 |
Spacegroup name | P 32 |
Unit cell lengths | 71.607, 71.607, 87.327 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 23.440 - 1.680 |
R-factor | 0.1562 |
Rwork | 0.155 |
R-free | 0.17690 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 6sbn |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | PHASER |
Refinement software | PHENIX (1.19.2_4158) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 30.000 | 30.000 | 1.740 |
High resolution limit [Å] | 1.680 | 3.620 | 1.680 |
Rmerge | 0.144 | 0.085 | 0.745 |
Rmeas | 0.151 | 0.089 | 0.785 |
Rpim | 0.044 | 0.026 | 0.243 |
Total number of observations | 639478 | ||
Number of reflections | 56997 | 5718 | 5729 |
<I/σ(I)> | 3.4 | ||
Completeness [%] | 99.9 | 99.9 | 99.8 |
Redundancy | 11.2 | 11.6 | 9.9 |
CC(1/2) | 0.996 | 0.820 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 6.5 | 295 | 20% PEG 8000, 0.2M calcium acelate, 0.1M sodium cacodylate |