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7V8K

Toxoplasma gondii Prolyl-tRNA Synthetase (TgPRS) in Complex with L-Proline

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsDIAMOND BEAMLINE I03
Synchrotron siteDiamond
BeamlineI03
Temperature [K]100
Detector technologyPIXEL
Collection date2019-10-02
DetectorDECTRIS EIGER2 XE 16M
Wavelength(s)0.9197
Spacegroup nameP 1 21 1
Unit cell lengths77.196, 81.673, 104.660
Unit cell angles90.00, 102.94, 90.00
Refinement procedure
Resolution68.291 - 2.470
R-factor0.1693
Rwork0.167
R-free0.21930
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)5xif
Data reduction softwareautoPROC
Data scaling softwareautoPROC
Phasing softwareAuto-Rickshaw
Refinement softwarePHENIX (1.15rc1_3423)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]102.0002.510
High resolution limit [Å]2.4702.470
Rmeas0.2041.429
Number of reflections456612263
<I/σ(I)>8.22.3
Completeness [%]99.9100
Redundancy6.66.6
CC(1/2)1.0000.400
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP6.52930.1 M Amino acids (0.2M DL-Glutamic acid monohydrate, 0.2M DL-Alanine, 0.2M Glycine, 0.2M DL-Lysine monohydrochloride, 0.2M DL-Serine), 0.1 M Buffer (Imidazole, MES monohydrate), 30 % v/v Precipitant (40% v/v Ethylene glycol, 20% w/v PEG 8000)

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PDB entries from 2024-05-15

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