7UX8
Crystal structure of MfnG, an L- and D-tyrosine O-methyltransferase from the marformycin biosynthesis pathway of Streptomyces drozdowiczii, with SAH and L-Tyrosine bound at 1.4 A resolution (P212121 - form II)
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 21-ID-D |
Synchrotron site | APS |
Beamline | 21-ID-D |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2021-03-05 |
Detector | DECTRIS EIGER X 9M |
Wavelength(s) | 0.9762 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 60.837, 87.167, 134.910 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 31.300 - 1.400 |
R-factor | 0.154 |
Rwork | 0.153 |
R-free | 0.17200 |
Structure solution method | FOURIER SYNTHESIS |
Starting model (for MR) | 7ux7 |
RMSD bond length | 0.006 |
RMSD bond angle | 1.004 |
Data reduction software | XDS (Feb 5, 2021) |
Data scaling software | XDS (Feb 5, 2021) |
Phasing software | PHENIX (1.19) |
Refinement software | PHENIX (1.20.1) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 31.300 | 31.300 | 1.480 |
High resolution limit [Å] | 1.400 | 4.190 | 1.400 |
Rmerge | 0.110 | 0.048 | 1.903 |
Rmeas | 0.114 | 0.049 | 2.000 |
Number of reflections | 141301 | 5661 | 22390 |
<I/σ(I)> | 15.37 | 59.2 | 0.94 |
Completeness [%] | 99.7 | 99.9 | 98.6 |
Redundancy | 13.109 | 13.755 | 10.496 |
CC(1/2) | 0.999 | 0.999 | 0.456 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 8 | 298 | 0.1 M Tris pH 8, 30% Polyethylene glycol monomethyl ether (PEG MME) 2000, Additive: 0.002 M S-Adenosyl methionine (SAM/AdoMet), Soaking: added crystaline L-Tyrosine to the drop after MfnG crystals were formed |