7ULT
Crystal Structure of SARS-CoV-2 Nsp16/10 Heterodimer Apo-Form.
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 21-ID-D |
Synchrotron site | APS |
Beamline | 21-ID-D |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2021-10-07 |
Detector | DECTRIS EIGER X 9M |
Wavelength(s) | 1.12723 |
Spacegroup name | P 32 2 1 |
Unit cell lengths | 166.681, 166.681, 98.550 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 29.900 - 1.900 |
R-factor | 0.1656 |
Rwork | 0.164 |
R-free | 0.18750 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 6w4h |
RMSD bond length | 0.005 |
RMSD bond angle | 1.325 |
Data reduction software | HKL-3000 |
Data scaling software | HKL-3000 |
Phasing software | PHASER |
Refinement software | REFMAC (5.8.0267) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 30.000 | 1.930 |
High resolution limit [Å] | 1.900 | 1.900 |
Rmerge | 0.130 | 1.403 |
Rmeas | 0.137 | |
Rpim | 0.041 | 0.458 |
Number of reflections | 123235 | 5985 |
<I/σ(I)> | 19.1 | 1.8 |
Completeness [%] | 99.7 | 97.8 |
Redundancy | 11.1 | 10 |
CC(1/2) | 0.998 | 0.577 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 7.5 | 292 | Protein: 5.3 mg/ml (nsp10/nsp16 1:1), 0.15M Sodium chloride, 0.01M Tris pH 7.5 , 5% Glycerol; Screen: ComPAS (F10), 0.4M Potassium/Sodium tartrate. |