7UDK
Crystal structure of designed helical repeat protein RPB_LRP2_R4 bound to LRPx4 peptide
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 23-ID-B |
Synchrotron site | APS |
Beamline | 23-ID-B |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2021-02-16 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 1.0329 |
Spacegroup name | P 32 2 1 |
Unit cell lengths | 70.780, 70.780, 128.150 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 35.390 - 3.180 |
R-factor | 0.2096 |
Rwork | 0.207 |
R-free | 0.25550 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | predicted model |
RMSD bond length | 0.004 |
RMSD bond angle | 0.616 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | PHASER |
Refinement software | PHENIX (1.19.2_4158) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 35.390 | 3.294 |
High resolution limit [Å] | 3.180 | 3.180 |
Rmerge | 0.080 | |
Rmeas | 0.085 | |
Rpim | 0.027 | |
Number of reflections | 6621 | 633 |
<I/σ(I)> | 14.13 | |
Completeness [%] | 89.0 | |
Redundancy | 9.8 | |
CC(1/2) | 1.000 | 0.687 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 7 | 291 | 0.1 M HEPES, pH 7, 10% w/v PEG6000 |