7U38
Pixantrone tethered DNA duplex
Experimental procedure
Experimental method | MAD |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 21-ID-D |
Synchrotron site | APS |
Beamline | 21-ID-D |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2020-10-22 |
Detector | DECTRIS EIGER X 9M |
Wavelength(s) | 0.91840 |
Spacegroup name | P 64 2 2 |
Unit cell lengths | 95.921, 95.921, 73.118 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 27.710 - 2.490 |
R-factor | 0.2462 |
Rwork | 0.245 |
R-free | 0.26180 |
Structure solution method | SAD |
RMSD bond length | 0.010 |
RMSD bond angle | 1.381 |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | AutoSol |
Refinement software | REFMAC (5.8.0267) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 50.000 | 2.580 |
High resolution limit [Å] | 2.490 | 5.360 | 2.490 |
Rmerge | 0.131 | 0.087 | 1.212 |
Rmeas | 0.133 | 0.088 | 1.229 |
Rpim | 0.022 | 0.014 | 0.198 |
Total number of observations | 276573 | ||
Number of reflections | 7367 | 835 | 710 |
<I/σ(I)> | 3.9 | ||
Completeness [%] | 99.9 | 100 | 100 |
Redundancy | 37.5 | 36.4 | 37.9 |
CC(1/2) | 0.999 | 0.917 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 7.5 | 291 | Crystallized from drops containing 2.2 M ammonium sulfate, and 2.8% to 3.8% PEG-400, in 0.1 M HEPES sodium |