7TJ4
Structure of the S. aureus amidase LytH and activator ActH extracellular domains
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 23-ID-D |
Synchrotron site | APS |
Beamline | 23-ID-D |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2021-04-18 |
Detector | DECTRIS PILATUS3 6M |
Wavelength(s) | 1.033 |
Spacegroup name | P 2 21 21 |
Unit cell lengths | 44.600, 71.260, 190.400 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 47.390 - 1.800 |
R-factor | 0.1875 |
Rwork | 0.186 |
R-free | 0.22900 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4rn7 |
RMSD bond length | 0.014 |
RMSD bond angle | 1.250 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | PHASER (2.8.1) |
Refinement software | PHENIX (1.19.2-4158-000) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 47.390 | 47.390 | 1.910 |
High resolution limit [Å] | 1.800 | 5.370 | 1.800 |
Rmerge | 0.142 | 0.053 | 3.542 |
Rmeas | 0.147 | 0.056 | 3.687 |
Number of reflections | 55848 | 2364 | 8653 |
<I/σ(I)> | 12 | 38.82 | 0.93 |
Completeness [%] | 97.1 | 98.3 | 94.8 |
Redundancy | 13.106 | 11.843 | 12.917 |
CC(1/2) | 0.998 | 0.998 | 0.587 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION | 6.3 | 293 | 0.1 M ammonium nitrate, 22% (w/v) PEG 3350 |