7T8R
Co-crystal structure of SARS-CoV-2 Mpro C145A with substrate peptide 7/8
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | ROTATING ANODE |
Source details | RIGAKU MICROMAX-007 HF |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2021-12-06 |
Detector | RIGAKU HyPix-6000HE |
Wavelength(s) | 1.54178 |
Spacegroup name | C 1 2 1 |
Unit cell lengths | 98.546, 79.980, 51.876 |
Unit cell angles | 90.00, 114.54, 90.00 |
Refinement procedure
Resolution | 24.580 - 1.740 |
R-factor | 0.1867 |
Rwork | 0.184 |
R-free | 0.22780 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 7l0d |
RMSD bond length | 0.018 |
RMSD bond angle | 1.619 |
Data reduction software | CrysalisPro |
Data scaling software | CrysalisPro |
Phasing software | PHASER |
Refinement software | PHENIX (1.19.2_4158) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 24.580 | 1.802 |
High resolution limit [Å] | 1.740 | 1.740 |
Rmerge | 0.069 | 0.514 |
Rmeas | 0.073 | 0.583 |
Rpim | 0.024 | 0.271 |
Number of reflections | 37551 | 3732 |
<I/σ(I)> | 22.39 | 2.16 |
Completeness [%] | 98.5 | |
Redundancy | 7.2 | |
CC(1/2) | 0.999 | 0.925 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 293 | 10-20 % (w/v) PEG 3350, 0.20-0.30 M NaCl, and 0.1 M Bis-Tris methane pH 5.5 |