7T6C
E. coli dihydroorotate dehydrogenase bound to the ubiquinone surrogate DCIP
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 23-ID-B |
Synchrotron site | APS |
Beamline | 23-ID-B |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2021-04-17 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 1.033184 |
Spacegroup name | C 2 2 21 |
Unit cell lengths | 104.046, 169.328, 129.970 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 48.300 - 2.530 |
R-factor | 0.2043 |
Rwork | 0.203 |
R-free | 0.22580 |
Structure solution method | SIR |
Starting model (for MR) | 7t5k |
RMSD bond length | 0.005 |
RMSD bond angle | 0.804 |
Data reduction software | XDS |
Data scaling software | XDS |
Phasing software | PHASER |
Refinement software | PHENIX (1.19.2_4158) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 48.300 | 2.620 |
High resolution limit [Å] | 2.530 | 2.530 |
Rmerge | 0.170 | 1.317 |
Rmeas | 0.182 | |
Rpim | 0.065 | 0.510 |
Number of reflections | 38184 | 3404 |
<I/σ(I)> | 9.19 | |
Completeness [%] | 98.8 | 89.23 |
Redundancy | 7.5 | 7.4 |
CC(1/2) | 0.995 | 0.656 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 7.4 | 293 | DL-malic acid |