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7SGU

Papain-Like Protease of SARS CoV-2, C111S mutant, in complex with PLP_Snyder608 inhibitor

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsAPS BEAMLINE 19-ID
Synchrotron siteAPS
Beamline19-ID
Temperature [K]100
Detector technologyPIXEL
Collection date2020-09-18
DetectorDECTRIS PILATUS3 X 6M
Wavelength(s)0.9792
Spacegroup nameP 32 2 1
Unit cell lengths85.075, 85.075, 132.548
Unit cell angles90.00, 90.00, 120.00
Refinement procedure
Resolution42.570 - 1.790
R-factor0.1681
Rwork0.167
R-free0.18770
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)6wrh
RMSD bond length0.011
RMSD bond angle1.584
Data reduction softwareHKL-3000
Data scaling softwareHKL-3000
Phasing softwareHKL-3000
Refinement softwareREFMAC (5.8.0266)
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]42.57042.5701.820
High resolution limit [Å]1.7904.8601.790
Rmerge0.1110.0611.690
Rmeas0.1170.0641.805
Rpim0.0350.0190.626
Number of reflections5297128652578
<I/σ(I)>6.91.07
Completeness [%]100.099.899.7
Redundancy10.810.78.1
CC(1/2)0.9950.9980.534
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP4.52770.1 M sodium acetate pH 4.5, 2 M sodium formate, 4 mM PLP_Snyder608

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PDB entries from 2024-05-15

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