7SGU
Papain-Like Protease of SARS CoV-2, C111S mutant, in complex with PLP_Snyder608 inhibitor
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 19-ID |
Synchrotron site | APS |
Beamline | 19-ID |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2020-09-18 |
Detector | DECTRIS PILATUS3 X 6M |
Wavelength(s) | 0.9792 |
Spacegroup name | P 32 2 1 |
Unit cell lengths | 85.075, 85.075, 132.548 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 42.570 - 1.790 |
R-factor | 0.1681 |
Rwork | 0.167 |
R-free | 0.18770 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 6wrh |
RMSD bond length | 0.011 |
RMSD bond angle | 1.584 |
Data reduction software | HKL-3000 |
Data scaling software | HKL-3000 |
Phasing software | HKL-3000 |
Refinement software | REFMAC (5.8.0266) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 42.570 | 42.570 | 1.820 |
High resolution limit [Å] | 1.790 | 4.860 | 1.790 |
Rmerge | 0.111 | 0.061 | 1.690 |
Rmeas | 0.117 | 0.064 | 1.805 |
Rpim | 0.035 | 0.019 | 0.626 |
Number of reflections | 52971 | 2865 | 2578 |
<I/σ(I)> | 6.9 | 1.07 | |
Completeness [%] | 100.0 | 99.8 | 99.7 |
Redundancy | 10.8 | 10.7 | 8.1 |
CC(1/2) | 0.995 | 0.998 | 0.534 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 4.5 | 277 | 0.1 M sodium acetate pH 4.5, 2 M sodium formate, 4 mM PLP_Snyder608 |