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7S69

N-acetylglucosamine-1-phosphotransferase (GNPT) gamma subunit (GNPTG), from clawed frog

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsALS BEAMLINE 5.0.2
Synchrotron siteALS
Beamline5.0.2
Temperature [K]100
Detector technologyPIXEL
Collection date2018-12-03
DetectorDECTRIS PILATUS3 S 6M
Wavelength(s)1
Spacegroup nameP 21 21 21
Unit cell lengths50.317, 61.684, 163.029
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution49.190 - 3.040
R-factor0.1956
Rwork0.191
R-free0.24170
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)2lvx
RMSD bond length0.004
RMSD bond angle0.669
Data reduction softwareHKL-2000
Data scaling softwareHKL-2000
Phasing softwarePHASER
Refinement softwarePHENIX (1.19.2_4158)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]50.0003.110
High resolution limit [Å]3.0403.040
Rmeas0.136
Number of reflections8751577
<I/σ(I)>12.71.29
Completeness [%]85.0
Redundancy8
CC(1/2)0.812
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP829320% PEG 3350, 0.1M bis-tris propane pH8, 0.2M KNO3

219869

PDB entries from 2024-05-15

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