7S0Y
Structures of TcdB in complex with Cdc42
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 24-ID-C |
Synchrotron site | APS |
Beamline | 24-ID-C |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2018-07-12 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 0.97918 |
Spacegroup name | C 2 2 21 |
Unit cell lengths | 122.354, 140.948, 111.803 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 92.400 - 2.790 |
R-factor | 0.21666 |
Rwork | 0.214 |
R-free | 0.25924 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 2bvm |
RMSD bond length | 0.004 |
RMSD bond angle | 1.310 |
Data reduction software | XDS |
Data scaling software | XDS |
Phasing software | PHENIX |
Refinement software | REFMAC (5.8.0258) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 111.800 | 2.940 |
High resolution limit [Å] | 2.790 | 2.790 |
Rmerge | 0.063 | |
Number of reflections | 24433 | 3527 |
<I/σ(I)> | 16.9 | 2.9 |
Completeness [%] | 100.0 | |
Redundancy | 6.7 | |
CC(1/2) | 0.999 | 0.865 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 291 | 0.1 M sodium cacodylate (pH 6.6), 2.4 M ammonium sulfate, and 2.5% (v/v) Jeffamine M-600 (pH 7.0) |