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7RTP

Structure of full-length human lambda-6A light chain JTO in complex with urea stabilizer 20 [1-(2-(7-(diethylamino)-4-methyl-2-oxo-2H-chromen-3-yl)ethyl)-3-(pyridin-3-ylmethyl)urea]

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsAPS BEAMLINE 23-ID-B
Synchrotron siteAPS
Beamline23-ID-B
Temperature [K]100
Detector technologyPIXEL
Collection date2019-06-08
DetectorDECTRIS EIGER X 16M
Wavelength(s)1.0332
Spacegroup nameP 21 21 21
Unit cell lengths63.643, 80.585, 94.645
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution47.370 - 2.090
R-factor0.1819
Rwork0.179
R-free0.23800
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)6mg5
RMSD bond length0.012
RMSD bond angle1.678
Data reduction softwareXDS
Data scaling softwareSCALA
Phasing softwarePHASER
Refinement softwareREFMAC (5.8.0238)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]47.3702.200
High resolution limit [Å]2.0902.090
Rpim0.0340.210
Number of reflections296554230
<I/σ(I)>14.93.7
Completeness [%]99.8
Redundancy12.9
CC(1/2)1.0000.920
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP29620% PEG 3350 and 0.25 M NH4H2PO4 at 23 degrees C

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PDB entries from 2024-05-15

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