7REK
Crystal structure of the first bromodomain (BD1) of human BRD4 in complex with dual BRD4-JAK2 inhibitor MA9-086
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 22-ID |
Synchrotron site | APS |
Beamline | 22-ID |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2018-03-16 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 1.000 |
Spacegroup name | P 1 |
Unit cell lengths | 30.300, 40.280, 57.300 |
Unit cell angles | 100.11, 104.40, 90.13 |
Refinement procedure
Resolution | 39.610 - 1.200 |
R-factor | 0.1663 |
Rwork | 0.166 |
R-free | 0.19060 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 7k6h |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | PHASER |
Refinement software | PHENIX (1.19_4085) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 39.610 | 39.610 | 1.230 |
High resolution limit [Å] | 1.200 | 5.370 | 1.200 |
Rmerge | 0.030 | 0.019 | 0.217 |
Rmeas | 0.043 | 0.027 | 0.307 |
Total number of observations | 132799 | ||
Number of reflections | 72084 | 881 | 3455 |
<I/σ(I)> | 10.81 | 24.56 | 2.77 |
Completeness [%] | 89.2 | 96.6 | 57.8 |
Redundancy | 1.842 | 1.932 | 1.824 |
CC(1/2) | 0.998 | 0.998 | 0.943 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 291 | 0.2 M Ammonium sulphate, 0.15 M Sodium chloride, 0.1 M Tris (pH 8.5), 25 % w/v PEG 3,350 |