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7R8Y

Ancestral protein AncThEn of Phosphomethylpyrimidine kinases family

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsLNLS BEAMLINE W01B-MX2
Synchrotron siteLNLS
BeamlineW01B-MX2
Temperature [K]100
Detector technologyPIXEL
Collection date2019-06-05
DetectorDECTRIS PILATUS 2M
Wavelength(s)1.45867
Spacegroup nameP 42 21 2
Unit cell lengths113.316, 113.316, 112.233
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution45.960 - 3.200
R-factor0.2332
Rwork0.232
R-free0.25390
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)1jxh
RMSD bond length0.006
RMSD bond angle0.975
Data reduction softwareXDS
Data scaling softwareAimless
Phasing softwareMOLREP
Refinement softwarePHENIX (1.13_2998)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]45.9603.314
High resolution limit [Å]3.2003.200
Rmerge0.4103.331
Rmeas0.4183.394
Rpim0.0810.645
Number of reflections125681223
<I/σ(I)>10.881.27
Completeness [%]99.899.92
Redundancy25.827.3
CC(1/2)0.9960.544
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP292Protein condition: Protein 20 mg/mL, HMP 1 mM, ADP 1 mM, HEPES 50 mM pH 8.0, NaCl 150 mM and 2-mercaptoethanol 5 mM Reservoir condition: 2-Propanol 14% v/v, Calcium chloride dihydrate 0.14 M, Sodium acetate 0.07 M, Glycerol 30% v/v.

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PDB entries from 2025-12-03

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