7R2M
SYNJ2BP complex with a synthetic Vangl2 peptide (9mer).
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ESRF BEAMLINE MASSIF-3 |
Synchrotron site | ESRF |
Beamline | MASSIF-3 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2021-05-04 |
Detector | DECTRIS EIGER X 4M |
Wavelength(s) | 0.9677 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 60.270, 60.710, 143.150 |
Unit cell angles | 90.00, 92.88, 90.00 |
Refinement procedure
Resolution | 47.656 - 2.400 |
R-factor | 0.2163 |
Rwork | 0.215 |
R-free | 0.23910 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 2jik |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | PHENIX |
Refinement software | PHENIX (1.13_2998) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 47.656 | 47.656 | 2.460 |
High resolution limit [Å] | 2.400 | 10.730 | 2.400 |
Rmerge | 0.130 | 0.036 | 1.291 |
Rmeas | 0.140 | 0.039 | 1.387 |
Total number of observations | 286773 | ||
Number of reflections | 39408 | 489 | 2928 |
<I/σ(I)> | 10.15 | 37.05 | 1.22 |
Completeness [%] | 96.5 | 97.2 | 97.9 |
Redundancy | 7.277 | 6.558 | 7.448 |
CC(1/2) | 0.997 | 0.999 | 0.573 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 7 | 293 | 0.1 M Ammonium sulfate, 0.1 M Sodium formate, 0.1 M HEPES 7.0, 25 % v/v PEG Smear Broad |