7QXM
Crystal structure of the Vibrio cholerae replicative helicase (DnaB)
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SOLEIL BEAMLINE PROXIMA 1 |
Synchrotron site | SOLEIL |
Beamline | PROXIMA 1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2019-02-21 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 0.97857 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 141.230, 150.099, 188.264 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 32.630 - 3.800 |
R-factor | 0.2659 |
Rwork | 0.266 |
R-free | 0.27360 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 6t66 |
RMSD bond length | 0.004 |
RMSD bond angle | 0.610 |
Data reduction software | XDS (Mar 15, 2019) |
Data scaling software | XSCALE (Mar 15, 2019) |
Phasing software | MOLREP (Vers 11.7.01) |
Refinement software | BUSTER (2.10.3 (20-MAY-2020)) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 32.630 | 32.630 | 3.900 |
High resolution limit [Å] | 3.800 | 16.990 | 3.800 |
Rmerge | 0.408 | 0.077 | 3.583 |
Rmeas | 0.424 | 0.081 | 3.719 |
Total number of observations | 551596 | ||
Number of reflections | 40084 | 496 | 2925 |
<I/σ(I)> | 4.84 | 24.53 | 0.27 |
Completeness [%] | 99.9 | 94.8 | 100 |
Redundancy | 13.761 | 11.581 | 13.967 |
CC(1/2) | 0.995 | 0.998 | 0.241 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 4.6 | 291 | 0.1M Sodium Acetate 1.2M Sodium Malonate |