7QS3
Crystal structure of B30.2 PRYSPRY domain of TRIM16
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SLS BEAMLINE X06SA |
Synchrotron site | SLS |
Beamline | X06SA |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2020-12-18 |
Detector | DECTRIS EIGER2 X 16M |
Wavelength(s) | 1.00000 |
Spacegroup name | P 43 21 2 |
Unit cell lengths | 55.730, 55.730, 159.602 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 45.690 - 1.750 |
R-factor | 0.1647 |
Rwork | 0.163 |
R-free | 0.19790 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 6flm |
RMSD bond length | 0.015 |
RMSD bond angle | 1.448 |
Data reduction software | XDS |
Data scaling software | Aimless (0.7.4) |
Phasing software | PHASER |
Refinement software | REFMAC (5.8.0267) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 45.690 | 45.690 | 1.810 |
High resolution limit [Å] | 1.750 | 6.780 | 1.750 |
Rmerge | 0.058 | 0.042 | 0.992 |
Rmeas | 0.065 | 0.045 | 1.123 |
Rpim | 0.021 | 0.016 | 0.366 |
Number of reflections | 26339 | 565 | 2509 |
<I/σ(I)> | 16.3 | 2.3 | |
Completeness [%] | 99.9 | 99.8 | 99.9 |
Redundancy | 9 | 7.7 | 9.1 |
CC(1/2) | 0.999 | 0.999 | 0.915 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 6.5 | 293.15 | 20% PEG3350, 10% ethylene glycol, 0.1M bis-tris-propane pH 6.5, 0.2M sodium bromide |