7QK4
EED in complex with PRC2 allosteric inhibitor compound 22 (MAK683)
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRF BEAMLINE BL17U1 |
Synchrotron site | SSRF |
Beamline | BL17U1 |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2014-09-19 |
Detector | ADSC QUANTUM 315r |
Wavelength(s) | 0.979 |
Spacegroup name | C 2 2 21 |
Unit cell lengths | 50.456, 91.202, 179.016 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 15.970 - 1.602 |
R-factor | 0.183 |
Rwork | 0.182 |
R-free | 0.20570 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5h19 |
RMSD bond length | 0.008 |
RMSD bond angle | 0.970 |
Data reduction software | autoPROC |
Data scaling software | STARANISO (0.7.7) |
Phasing software | PHASER |
Refinement software | BUSTER (2.11.8) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 19.960 | 19.960 | 1.649 |
High resolution limit [Å] | 1.602 | 4.693 | 1.602 |
Rmerge | 0.058 | 0.037 | 0.613 |
Rmeas | 0.063 | 0.041 | 0.697 |
Rpim | 0.024 | 0.016 | 0.323 |
Total number of observations | 291362 | 13754 | 9409 |
Number of reflections | 43547 | 2176 | 2177 |
<I/σ(I)> | 17.13 | 37.64 | 2.19 |
Completeness [%] | 84.5 | 94.4 | 74.9 |
Completeness (spherical) [%] | 79.6 | 94.4 | 48.9 |
Completeness (ellipsoidal) [%] | 84.5 | 94.4 | 74.9 |
Redundancy | 6.69 | 6.32 | 4.32 |
CC(1/2) | 0.999 | 0.998 | 0.833 |
Anomalous completeness (spherical) | 79.1 | 93.6 | 47.1 |
Anomalous completeness | 84.0 | 93.6 | 72.9 |
Anomalous redundancy | 3.5 | 3.6 | 2.3 |
CC(ano) | -0.143 | -0.084 | -0.036 |
|DANO|/σ(DANO) | 0.7 | 0.6 | 0.6 |
Diffraction limits | Principal axes of ellipsoid fitted to diffraction cut-off surface |
1.522 Å | 1.000, 1.000, 1.000 |
1.753 Å | 0.000, 0.000, 0.000 |
1.622 Å | 0.000, 0.000, 0.000 |
Criteria used in determination of diffraction limits | local <I/sigmaI> ≥ 1.2 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 293 | 0.1 M Bis-Tris pH 6.0, 0.2 M MgCl2, 20% PEG 3350 |