7QJU
EED in complex with PRC2 allosteric inhibitor compound 7
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SLS BEAMLINE X10SA |
Synchrotron site | SLS |
Beamline | X10SA |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2014-03-19 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 1.000 |
Spacegroup name | P 21 21 2 |
Unit cell lengths | 93.209, 178.187, 50.493 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 48.580 - 1.800 |
R-factor | 0.188 |
Rwork | 0.187 |
R-free | 0.21310 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5h19 |
RMSD bond length | 0.008 |
RMSD bond angle | 0.960 |
Data reduction software | autoPROC |
Data scaling software | STARANISO (0.7.7) |
Phasing software | PHASER |
Refinement software | BUSTER (2.11.8) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 48.580 | 48.580 | 1.852 |
High resolution limit [Å] | 1.800 | 5.284 | 1.800 |
Rmerge | 0.101 | 0.040 | 0.905 |
Rmeas | 0.110 | 0.044 | 0.987 |
Rpim | 0.042 | 0.017 | 0.390 |
Total number of observations | 448284 | 22058 | 21072 |
Number of reflections | 67617 | 3381 | 3381 |
<I/σ(I)> | 12.55 | 35.47 | 1.89 |
Completeness [%] | 95.1 | 99.8 | 98.1 |
Completeness (spherical) [%] | 85.7 | 99.8 | 53.3 |
Completeness (ellipsoidal) [%] | 95.1 | 99.8 | 98.1 |
Redundancy | 6.63 | 6.52 | 6.23 |
CC(1/2) | 0.999 | 0.999 | 0.714 |
Anomalous completeness (spherical) | 85.2 | 100.0 | 53.3 |
Anomalous completeness | 94.8 | 100.0 | 97.9 |
Anomalous redundancy | 3.5 | 3.7 | 3.2 |
CC(ano) | -0.011 | -0.027 | -0.019 |
|DANO|/σ(DANO) | 0.7 | 0.9 | 0.7 |
Diffraction limits | Principal axes of ellipsoid fitted to diffraction cut-off surface |
2.095 Å | 1.000, 1.000, 1.000 |
1.759 Å | 0.000, 0.000, 0.000 |
1.722 Å | 0.000, 0.000, 0.000 |
Criteria used in determination of diffraction limits | local <I/sigmaI> ≥ 1.2 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 293 | 0.1 M Tris pH 8.0, 16% PEG 8000 |