7QBS
B12-dependent radical SAM methyltransferase, Mmp10 with [4Fe-4S] cluster, cobalamin, S-adenosyl-L-methionine, and peptide bound.
Experimental procedure
Experimental method | MAD |
Source type | SYNCHROTRON |
Source details | SOLEIL BEAMLINE PROXIMA 1 |
Synchrotron site | SOLEIL |
Beamline | PROXIMA 1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2020-09-25 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 0.97857, 1.72200 |
Spacegroup name | P 63 |
Unit cell lengths | 119.290, 119.290, 68.560 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 45.000 - 2.327 |
R-factor | 0.1849 |
Rwork | 0.182 |
R-free | 0.23520 |
Structure solution method | MAD |
RMSD bond length | 0.009 |
RMSD bond angle | 1.240 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | SHELXCD |
Refinement software | BUSTER (2.10.4 (16-JUL-2021)) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 45.000 | 2.390 |
High resolution limit [Å] | 2.327 | 2.330 |
Rmerge | 0.202 | |
Rpim | 0.045 | |
Number of reflections | 23924 | 479 |
<I/σ(I)> | 11.6 | 0.8 |
Completeness [%] | 99.6 | 95.2 |
Redundancy | 20.7 | 18.2 |
CC(1/2) | 0.999 | 0.283 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 8 | 298 | 23% (w/v) PEG8000, 100 mM Tris |