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7Q9R

Cocrystal structure of PDE6D bound to NRAS peptide

This is a non-PDB format compatible entry.
Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsDIAMOND BEAMLINE I04-1
Synchrotron siteDiamond
BeamlineI04-1
Temperature [K]100
Detector technologyPIXEL
Collection date2019-05-04
DetectorDECTRIS EIGER X 16M
Wavelength(s)0.91587
Spacegroup nameP 32 2 1
Unit cell lengths55.788, 55.788, 114.842
Unit cell angles90.00, 90.00, 120.00
Refinement procedure
Resolution48.360 - 2.500
Rwork0.234
R-free0.27590
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)5tb5
RMSD bond length0.001
RMSD bond angle1.016
Data reduction softwarexia2
Data scaling softwarexia2
Phasing softwarePHASER
Refinement softwareREFMAC (5.8.0258)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]114.8702.560
High resolution limit [Å]2.5002.500
Number of reflections7634547
<I/σ(I)>10.5
Completeness [%]100.0
Redundancy9.5
CC(1/2)0.9950.859
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP2790.1 M citric acid pH 4.0 and 3.2 M AmSO4

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