7Q6V
Crystal structure of the bromodomain of ATAD2 with triazolopyridine (cpd 14)
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | ROTATING ANODE |
Source details | RIGAKU FR-E+ |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2015-07-07 |
Detector | RIGAKU SATURN 944+ |
Wavelength(s) | 1.5406 |
Spacegroup name | P 65 2 2 |
Unit cell lengths | 79.124, 79.124, 137.997 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 48.620 - 1.960 |
R-factor | 0.1881 |
Rwork | 0.187 |
R-free | 0.20570 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | internal model |
RMSD bond length | 0.010 |
RMSD bond angle | 0.900 |
Data scaling software | Aimless (0.4.8) |
Phasing software | AMoRE |
Refinement software | BUSTER (2.11.6) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 48.620 | 48.620 | 2.100 |
High resolution limit [Å] | 1.960 | 5.550 | 1.960 |
Rmerge | 0.065 | 0.025 | 0.411 |
Rmeas | 0.071 | 0.028 | 0.489 |
Rpim | 0.030 | 0.012 | 0.258 |
Total number of observations | 100672 | 5106 | 9732 |
Number of reflections | 18579 | 927 | 3056 |
<I/σ(I)> | 19.4 | 53.9 | 3 |
Completeness [%] | 98.0 | 97.2 | 91.1 |
Redundancy | 5.4 | 5.5 | 3.2 |
CC(1/2) | 0.999 | 0.999 | 0.785 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION | 6.25 | 293 | ATAD2 (981-1108) at 12 mg/ml in 25 mM Tris pH 9.7, 300 mM NaCl, 0.5 mM TCEP crystallised from 20% PEG 3350, 0.2 M ammonium sulfate, 0.1 M Bis-Tris pH 6.25. Ligands were introduced by soaking, cryo-protection with 20 % glycerol. |