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7Q4F

Structure of coproheme decarboxylase from Corynebacterium dipththeriae W183Y mutant in complex with coproheme

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsESRF BEAMLINE ID23-2
Synchrotron siteESRF
BeamlineID23-2
Temperature [K]100
Detector technologyPIXEL
Collection date2021-07-08
DetectorDECTRIS PILATUS3 X 2M
Wavelength(s)0.8731
Spacegroup nameP 3 1 2
Unit cell lengths141.809, 141.809, 124.863
Unit cell angles90.00, 90.00, 120.00
Refinement procedure
Resolution43.510 - 2.150
R-factor0.1416
Rwork0.140
R-free0.18220
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)6xuc
RMSD bond length0.004
RMSD bond angle0.602
Data reduction softwareXDS
Phasing softwarePHASER
Refinement softwarePDB-REDO
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]43.5092.227
High resolution limit [Å]2.1502.150
Rmerge0.378
Rmeas0.3884.259
Number of reflections778726892
<I/σ(I)>9.370.64
Completeness [%]97.0
Redundancy19.9
CC(1/2)0.9940.223
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP295.1520 %w/v PEG 3350 (Polymer), 0.1 M CBTP 6.4 pH (Buffer)

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PDB entries from 2024-05-15

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